大学化学 >> 2026, Vol. 41 >> Issue (6): 449-456.doi: 10.12461/PKU.DXHX202504038

自学之友 上一篇    

基于非球型原子模型的晶体结构精修实验操作案例

孙财, 郑寿添, 袁耀锋   

  1. 福州大学化学学院, 福建 福州 350108
  • 收稿日期:2025-04-08 录用日期:2025-07-29 发布日期:2026-06-18
  • 通讯作者: 郑寿添, 袁耀锋 E-mail:stzheng@fzu.edu.cn;Yaofeng_yuan@fzu.edu.cn Shoutian Zheng, Yaofeng Yuan
  • 基金资助:
    国家自然科学基金面上项目(22371045, 22575052);福建省本科高校教育教学重大研究项目(“福建省化学学科联盟”建设背景下化学创新人才培养)

Experimental case study on crystal structure refinement using non-spherical atomic models

Cai Sun, Shoutian Zheng, Yaofeng Yuan   

  1. College of Chemistry, Fuzhou University, Fuzhou 350108, Fujian Province, China
  • Received:2025-04-08 Accepted:2025-07-29 Published:2026-06-18
  • Contact: Shoutian Zheng, Yaofeng Yuan E-mail:stzheng@fzu.edu.cn;Yaofeng_yuan@fzu.edu.cn

摘要: X射线单晶结构分析是确定结构的重要手段,传统结构精修基于独立原子模型,忽略了化学键中的非球形电子分布,导致了氢原子位置的较大误差。利用非球形原子模型,不仅可以提升晶体结构精修结果,而且能够精准确定氢原子位置。本文介绍了非球形结构精修方法,以Olex2平台集成的非球形原子精修工具NoSpherA2为例,用一个共晶分子作为案例演示,展示了该方法在提升晶体结构解析精度方面的优势。通过本文的学习,化学专业学生和晶体学研究者能够掌握非球形结构精修方法,拓展量子晶体学的研究前沿知识。

关键词: 晶体学, 单晶结构分析, 非球形结构精修, NoSpherA2

Abstract: X-ray single-crystal structure analysis serves as a fundamental technique for molecular structure determination. Conventional refinement methods relying on the independent atom model fail to account for non-spherical electron density distributions in chemical bonds, resulting in substantial positional errors for hydrogen atoms. The implementation of non-spherical atomic models not only enhances refinement outcomes but also enables accurate localization of hydrogen atoms. This work presents the methodology of non-spherical structure refinement, employing the NoSpherA2 refinement tool integrated within the Olex2 platform. Through a practical demonstration using a cocrystal system, we illustrate the superior precision achieved with this approach. This case study provides chemistry students and crystallography researchers with practical guidance for implementing non-spherical refinement techniques while advancing their knowledge in quantum crystallography.

Key words: Crystallography, Single-crystal structure analysis, Non-spherical structure refinement, NoSpherA2