大学化学

所属专题: 第5届全国大学生化学实验创新设计大赛

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基于组合化学的虚拟化合物库构建与应用

陈怡娇, 姜子佳, 何春艳, 韦虹宇, 胡尧, 曾嵘, 黄谋新, 欧阳勤   

  1. 中国人民解放军陆军军医大学药物化学教研室, 重庆 400038
  • 收稿日期:2025-11-03 录用日期:2026-02-27
  • 通讯作者: 曾嵘, 黄谋新, 欧阳勤 E-mail:zengrong@tmmu.edu.cn;mxhuang@tmmu.edu.cn;ouyangq@tmmu.edu.cn Rong Zeng, Mouxin Huang, Qin Ouyang

Construction and application of virtual compound library based on combinatorial chemistry

Yijiao Chen, Zijia Jiang, Chunyan He, Hongyu Wei, Yao Hu, Rong Zeng, Mouxin Huang, Qin Ouyang   

  1. Department of Medicinal Chemistry, Army Medical University of Chinese People's Liberation Army, Chongqing 400038, China
  • Received:2025-11-03 Accepted:2026-02-27
  • Contact: Rong Zeng, Mouxin Huang, Qin Ouyang E-mail:zengrong@tmmu.edu.cn;mxhuang@tmmu.edu.cn;ouyangq@tmmu.edu.cn

摘要: 组合化学的出现使人们能够在短时间内合成大量的有机化合物,是有机化学向药物研发转化应用的重要策略,但受限于仪器设备和有限的学时,组合化学难以在有机化学实验教学中开展。本论文在组合化学思想的指导下,利用虚拟组合的方法,设计构建了含有4个母核、1836个分子的组合化合物库,并通过基于Sybyl软件的虚拟筛选技术,从化合物库中挑选出方便合成、且与乙酰胆碱酯酶结合力最强的化合物4-1-8-7-6。随后,我们合成了4-1-8-7-6,实验测得该化合物的生物活性优于临床药物他克林,验证了虚拟筛选技术的可靠性。本实验以极小的成本模拟了组合化学与药物筛选的全流程,创新地将组合化学和虚拟筛选融入有机化学实验教学。这种虚实结合的跨学科实验设计能够提高学生的创新思维和实践能力,为培养多元发展的综合型人才提供强大助力。

关键词: 有机化学, 组合化学, 虚拟筛选, 药物合成, 乙酰胆碱酯酶

Abstract: The advent of combinatorial chemistry has revolutionized the rapid synthesis of diverse organic compounds, serving as a pivotal strategy for translating organic chemistry into drug development applications. However, implementation in organic chemistry laboratory education remains challenging due to equipment limitations and constrained instructional time. Guided by combinatorial chemistry principles, we designed and constructed a virtual compound library comprising 4 core scaffolds and 1,836 molecules. Using Sybyl-based virtual screening technology, we identified compound 4-1-8-7-6 as both synthetically accessible and exhibiting the strongest binding affinity for acetylcholinesterase. Subsequent synthesis and biological evaluation demonstrated that 4-1-8-7-6 outperformed the clinical drug tacrine in activity, validating our virtual screening approach. This study successfully simulated the complete combinatorial chemistry and drug screening workflow with minimal cost, innovatively integrating these techniques into organic chemistry laboratory instruction. This interdisciplinary experimental design, combining virtual and practical methodologies, effectively enhances students’ innovative thinking and practical skills, thereby fostering the development of versatile, well-rounded scientific professionals.

Key words: Organic chemistry, Combinatorial chemistry, Virtual screening , Drug synthesis, Acetylcholinesterase